Index

_

__init__() (AbstractBaseScheduler method) (AlbumentationsAugmentationModule method) (AllTasksInfos method) (AugmentationModule method) (AugmentationModuleContainer method) (BaseHead method) (BaseModel method) (BaseNotifier method) (ClassLoader method) (CleanScheduler method) (CombinedModalityLoader method) (CreateScheduler method) (CutMixCallback method) (DataArchive method) (DSetCreator method) (EnsembleStorage method) (InfoScheduler method) (KorniaAugmentationModule method) (MetricsTrackerCallback method) (MixingCallback method) (MixUpCallback method) (MMLFileManager method) (MMLJobDescription method) (MMLTQDMProgressBar method) (ModalityLoader method) (ModelStorage method) (MultiLabelClassLoader method) (MultiTaskDataModule method) (NonMappingOpenCVMaskLoader method) (NumpyArrayImageLoader method) (OpenCVImageLoader method) (OpenCVMaskLoader method) (PillowImageLoader method) (PipelineCfg method) (PreprocessScheduler method) (PureTorchvisionImageLoader method) (RemoveConfig method) (ReuseConfig method) (RGBInfo method) (ScikitImageLoader method) (SingleFrameLightningModule method) (Sizes method) (SMPGenericModel method) (SMPHead method) (SoftLabelClassLoader method) (TaskCreator method) (TaskDataset method) (TaskDescription method) (TaskStruct method) (TaskStructFactory method) (throttle_logging method) (TimmGenericModel method) (TimmHead method) (TorchvisionAugmentationModule method) (TrainingScheduler method) (TransferScheduler method) (TupelizedTaskDataset method) (UpgradeScheduler method) (ValueLoader method) (WIPBar method)

__new__() (DataFormat method) (DataKind method) (DataSplit method) (Keyword method) (LearningPhase method) (License method) (Modality method) (TaskCreatorActions method) (TaskCreatorState method) (TaskType method)

A

AbstractBaseScheduler (class in mml.core.scripts.schedulers.base_scheduler) AcceleratedPillowImageLoader (class in mml.core.data_loading.modality_loaders) activate() (PipelineCfg method) add_assignment_path() (MMLFileManager class method) add_head() (BaseModel method) add_to_task_index() (MMLFileManager method) after_preparation_hook() (AbstractBaseScheduler method) (PreprocessScheduler method) (TrainingScheduler method) after_training_hook() (TrainingScheduler method) (TransferScheduler method) AlbumentationsAugmentationModule (class in mml.core.data_loading.augmentations.albumentations)

all_phases() (LearningPhase static method) AllTasksInfos (class in mml.interactive) ANATOMICAL_STRUCTURES (Keyword attribute) ANIMALS (Keyword attribute) apply_tv_tensor_types() (in module mml.core.data_loading.augmentations.torchvision) ARTIFICIAL (Keyword attribute) ask_confirmation() (in module mml.core.scripts.utils) ask_password() (in module mml.core.data_preparation.archive_extractors) AugmentationModule (class in mml.core.data_loading.augmentations.augmentation_module) AugmentationModuleContainer (class in mml.core.data_loading.augmentations.augmentation_module) auto_complete() (TaskCreator method) auto_create_tagged() (TaskCreator static method)

B

b (RGBInfo attribute) backup (RemoveConfig attribute) BaseHead (class in mml.core.models.torch_base) BaseModel (class in mml.core.models.torch_base) BaseNotifier (class in mml.core.scripts.notifier) BATCHED_SAMPLE_DICTS (DataFormat attribute) BBOX (Modality attribute) before_finishing_hook() (AbstractBaseScheduler method) (CleanScheduler method) (InfoScheduler method) (PreprocessScheduler method) (TrainingScheduler method)

before_training_hook() (TrainingScheduler method) (TransferScheduler method) beta() (in module mml.core.scripts.decorators) blueprint (RemoveConfig attribute) (ReuseConfig attribute) BONE (Keyword attribute) BRAIN (Keyword attribute) BREAST (Keyword attribute) BUILDINGS (Keyword attribute)

C

calc_means_stds_sizes() (in module mml.core.data_preparation.utils) CAPSULE_ENDOSCOPY (Keyword attribute) CATARACT_SURGERY (Keyword attribute) catch_time (class in mml.core.scripts.utils) CC_0_1_0 (License attribute) CC_BY_4_0 (License attribute) CC_BY_NC_4_0 (License attribute) CC_BY_NC_SA_4_0 (License attribute) CHARS_DIGITS (Keyword attribute) check_consistency() (AllTasksInfos method) check_exists() (TaskStructFactory method) check_hash() (DataArchive method) CHEST (Keyword attribute) CLASS (Modality attribute) class_occ (TaskDescription attribute) CLASSES (Modality attribute) CLASSIFICATION (TaskType attribute) ClassLoader (class in mml.core.data_loading.modality_loaders) CLE (Keyword attribute) CleanScheduler (class in mml.core.scripts.schedulers.clean_scheduler) clear_instance() (Singleton class method) clone() (PipelineCfg method) COLPOSCOPY (Keyword attribute) CombinedModalityLoader (class in mml.core.data_loading.modality_loaders) compare_schedule_entries() (AbstractBaseScheduler static method) compose_albumentations_transforms() (AlbumentationsAugmentationModule static method) compute_and_log_loss() (SingleFrameLightningModule method) compute_and_log_metrics() (SingleFrameLightningModule method)

config_options (MMLJobDescription attribute) configure_optimizers() (SingleFrameLightningModule method) construct_saving_path() (MMLFileManager method) copy_metrics() (MetricsTrackerCallback method) copy_mml_configs() (in module mml.cli) copy_mml_env_file() (in module mml.cli) count_parameters() (BaseModel method) create_creator_func() (in module mml.core.data_preparation.registry) create_datamodule() (AbstractBaseScheduler method) create_fake_dset() (in module mml.core.data_preparation.fake_task) create_fake_task() (in module mml.core.data_preparation.fake_task) create_model() (AbstractBaseScheduler method) create_routine() (AbstractBaseScheduler method) (CleanScheduler method) (CreateScheduler method) (InfoScheduler method) (PreprocessScheduler method) (TrainingScheduler method) (UpgradeScheduler method) create_task() (CreateScheduler method) create_task_struct() (TaskStructFactory method) create_trainer() (AbstractBaseScheduler method) created (ModelStorage attribute) CreateScheduler (class in mml.core.scripts.schedulers.create_scheduler) creation_protocol (TaskDescription attribute) CT_SCAN (Keyword attribute) CUSTOM (License attribute) CutMixCallback (class in mml.core.data_loading.augmentations.mixup_cutmix)

D

DATA_FOUND (TaskCreatorState attribute) DataArchive (class in mml.core.data_preparation.data_archive) DATABASE_CONTENTS_LICENSE_1_0 (License attribute) DataFormat (class in mml.core.data_loading.augmentations.augmentation_module) DataKind (class in mml.core.data_preparation.data_archive) datasets (AllTasksInfos attribute) DataSplit (class in mml.core.data_loading.task_attributes) deactivate_lightning_logging() (in module mml.testing.fixtures) DEFAULT (TaskType attribute) default_file_copy() (in module mml.core.data_preparation.archive_extractors) default_file_manager() (in module mml.interactive) default_folder_copy() (in module mml.core.data_preparation.archive_extractors) DefaultRequirements (class in mml.interactive) deprecated() (in module mml.core.scripts.decorators) DERMATOSCOPY (Keyword attribute) description (TaskDescription attribute)

DETECTION (TaskType attribute) dimensions (AllTasksInfos attribute) disable_cache() (TaskDataset method) domains (AllTasksInfos attribute) download (TaskDescription attribute) download() (DSetCreator method) download_file() (in module mml.core.data_preparation.utils) DRIVING (Keyword attribute) DSetCreator (class in mml.core.data_preparation.dset_creator) dummy_fake_model_storage_path() (in module mml.testing.fixtures) dummy_fake_pipeline_path() (in module mml.testing.fixtures) dummy_fake_predictions_path() (in module mml.testing.fixtures) dummy_meta_class_path() (in module mml.testing.fixtures) dummy_meta_seg_path() (in module mml.testing.fixtures) DummyNotifier (class in mml.core.scripts.notifier) dump() (TaskStructFactory method)

E

EMailNotifier (class in mml.core.scripts.notifier) EmbeddedJobRunner (class in mml.interactive) emit_message() (BaseNotifier method) (DummyNotifier method) (EMailNotifier method) (SlackNotifier method) enable_cache() (TaskDataset method)

ENDOSCOPIC_INSTRUMENTS (Keyword attribute) ENDOSCOPY (Keyword attribute) EnsembleStorage (class in mml.core.scripts.model_storage) env_variables() (in module mml.testing.fixtures) exists() (Singleton class method) extract_from_pytorch_datasets() (DSetCreator method) EYE (Keyword attribute)

F

FACES (Keyword attribute) fake_task() (in module mml.testing.fixtures) file_manager() (in module mml.testing.fixtures) fill_cache() (TaskDataset method) FIND_DATA (TaskCreatorActions attribute) find_data() (TaskCreator method) FINISH (TaskCreatorActions attribute) finish_exp() (AbstractBaseScheduler method) FINISHED (TaskCreatorState attribute) fold (ModelStorage attribute) folds (EnsembleStorage property) FOLDS_SPLIT (TaskCreatorState attribute) forward() (BaseHead method) (BaseModel method) (SingleFrameLightningModule method) (SMPGenericModel method) (SMPHead method) (TimmGenericModel method) (TimmHead method)

forward_features() (BaseModel method) (SingleFrameLightningModule method) (SMPGenericModel method) (TimmGenericModel method) freeze_backbone() (BaseModel method) from_cfg() (AlbumentationsAugmentationModule static method) (KorniaAugmentationModule static method) (PipelineCfg class method) (TorchvisionAugmentationModule static method) from_csv() (AllTasksInfos class method) from_json() (EnsembleStorage class method) (ModelStorage class method) (TaskDescription class method) FULL_TRAIN (DataSplit attribute) FUNDUS_PHOTOGRAPHY (Keyword attribute)

G

g (RGBInfo attribute) GASTROSCOPY_COLONOSCOPY (Keyword attribute) get_all_dset_names() (MMLFileManager method) get_bbox_and_lam() (CutMixCallback method) get_by_name() (TaskStructFactory method) get_checkpoints_dir() (AbstractBaseScheduler method) get_classes_from_idx_dict() (TaskDataset static method) get_cpu_transforms() (MultiTaskDataModule method) get_criteria() (SingleFrameLightningModule method) get_data_format() (AugmentationModule static method) get_dataset_balancing_weights() (MultiTaskDataModule static method) get_dataset_path() (MMLFileManager method) get_download_path() (MMLFileManager method) get_dset_creator() (in module mml.core.data_preparation.registry) get_dset_for_task() (in module mml.core.data_preparation.registry) get_image_normalization() (MultiTaskDataModule method) get_iterator_and_mapping_from_image_dataset() (in module mml.core.data_preparation.utils) get_iterator_from_segmentation_dataset() (in module mml.core.data_preparation.utils) get_iterator_from_unlabeled_dataset() (in module mml.core.data_preparation.utils) get_loader_kwargs_from_cfg() (MultiTaskDataModule method) get_lora_compatible_layers() (BaseModel static method)

get_members() (EnsembleStorage method) get_message_header() (BaseNotifier method) get_metrics() (MMLRichProgressBar method) (MMLTQDMProgressBar method) (SingleFrameLightningModule method) get_modality_loaders() (MultiTaskDataModule method) get_monitor_metric() (SingleFrameLightningModule static method) get_pp_definition() (MMLFileManager method) get_prefix() (DefaultRequirements method) (JobPrefixRequirements method) get_rand_augment() (AlbumentationsAugmentationModule static method) get_rgb() (RGBInfo method) get_struct() (AbstractBaseScheduler method) get_task_creator() (in module mml.core.data_preparation.registry) get_task_info() (MMLFileManager method) get_task_infos() (in module mml.interactive) get_task_path() (MMLFileManager method) get_task_structs() (in module mml.interactive) get_transformed() (AllTasksInfos method) GLOBAL_REUSABLE (MMLFileManager attribute) global_reusables (MMLFileManager property) GYNECOLOGY (Keyword attribute)

H

HANDWRITINGS (Keyword attribute)

highlight_text() (AbstractBaseScheduler method)

I

id (TaskStruct property) identity() (TaskCreator method) idx_to_class (TaskDescription attribute) IMAGE (Modality attribute) image() (in module mml.testing.fixtures) IMAGE_ARTEFACTS (Keyword attribute) imbalance_ratios (AllTasksInfos attribute) img_examples (RemoveConfig attribute) implements_action() (in module mml.core.data_preparation.task_creator) infer_stats() (TaskCreator method) info_models() (InfoScheduler method)

info_study() (InfoScheduler method) info_task() (InfoScheduler method) InfoScheduler (class in mml.core.scripts.schedulers.info_scheduler) INIT (TaskCreatorState attribute) init() (in module mml.interactive) instance() (Singleton class method) INSTRUMENT_COUNT (Keyword attribute) InvalidTransitionError inverse() (KorniaAugmentationModule method) is_encrypted() (in module mml.core.data_preparation.archive_extractors) is_master() (BaseNotifier static method) is_tuning (SingleFrameLightningModule property)

J

JobPrefixRequirements (class in mml.interactive)

JobRunner (class in mml.interactive)

K

kaggle_download() (DSetCreator method) keep_top_level (DataArchive attribute) KEYPOINTS (Modality attribute) Keyword (class in mml.core.data_loading.task_attributes)

keywords (AllTasksInfos attribute) (TaskDescription attribute) kind (DataArchive attribute) KorniaAugmentationModule (class in mml.core.data_loading.augmentations.kornia)

L

LAPAROSCOPY (Keyword attribute) large_tasks (AllTasksInfos attribute) LARYNGOSCOPY (Keyword attribute) LearningPhase (class in mml.core.scripts.utils) License (class in mml.core.data_loading.task_attributes) license (TaskDescription attribute) lightning_tune() (AbstractBaseScheduler method) LOAD (TaskCreatorActions attribute) load() (ClassLoader method) (CombinedModalityLoader method) (ModalityLoader method) (MultiLabelClassLoader method) (NonMappingOpenCVMaskLoader method) (NumpyArrayImageLoader method) (OpenCVImageLoader method) (OpenCVMaskLoader method) (PillowImageLoader method) (PipelineCfg class method) (PureTorchvisionImageLoader method) (ScikitImageLoader method) (SoftLabelClassLoader method) (ValueLoader method)

load_checkpoint() (BaseModel static method) load_env() (in module mml.core.scripts.utils) load_existent() (TaskCreator method) load_mml_plugins() (in module mml.core.scripts.utils) load_project_models() (in module mml.interactive) load_sample() (TaskDataset method) load_state_dict() (MetricsTrackerCallback method) load_task_description() (MMLFileManager static method) load_task_description_header() (MMLFileManager static method) loading_old_dump() (TaskStructFactory method) log_confusion_matrix() (SingleFrameLightningModule method) log_cumulative_sizes() (CleanScheduler method) log_images_prediction_reference() (SingleFrameLightningModule method)

M

main() (in module mml.cli) make_deterministic() (in module mml.testing.fixtures) map_tag() (TaskCreator method) MASK (Modality attribute) mask() (in module mml.testing.fixtures) mask_transform() (in module mml.core.data_preparation.dset_creator) matches() (CombinedModalityLoader method) (ModalityLoader method) max_height (Sizes attribute) max_resolution (AllTasksInfos attribute) max_width (Sizes attribute) md5sum (DataArchive attribute) means (TaskDescription attribute) MEDICAL (Keyword attribute) medium_tasks (AllTasksInfos attribute) members (EnsembleStorage attribute) merge_project_models() (in module mml.interactive) metrics (EnsembleStorage attribute) (ModelStorage attribute) MetricsTrackerCallback (class in mml.core.scripts.callbacks) min_height (Sizes attribute) min_resolution (AllTasksInfos attribute) min_width (Sizes attribute) MIT (License attribute) MIXED (DataKind attribute) MixingCallback (class in mml.core.data_loading.augmentations.mixup_cutmix) mixup_cutmix_labels_getter() (in module mml.core.data_loading.augmentations.torchvision) mixup_targets() (MixingCallback method) MixUpCallback (class in mml.core.data_loading.augmentations.mixup_cutmix) mml.cli module mml.core.data_loading.augmentations.albumentations module mml.core.data_loading.augmentations.augmentation_module module mml.core.data_loading.augmentations.kornia module mml.core.data_loading.augmentations.mixup_cutmix module mml.core.data_loading.augmentations.torchvision module mml.core.data_loading.file_manager module mml.core.data_loading.lightning_datamodule module mml.core.data_loading.modality_loaders module mml.core.data_loading.task_attributes module mml.core.data_loading.task_dataset module mml.core.data_loading.task_description module mml.core.data_loading.task_struct module mml.core.data_loading.utils module mml.core.data_preparation.archive_extractors module mml.core.data_preparation.data_archive module mml.core.data_preparation.dset_creator module mml.core.data_preparation.fake_task module mml.core.data_preparation.registry module mml.core.data_preparation.task_creator module mml.core.data_preparation.utils module mml.core.models.lightning_single_frame module mml.core.models.smp module mml.core.models.timm module mml.core.models.torch_base module mml.core.scripts.callbacks module mml.core.scripts.decorators module mml.core.scripts.exceptions module mml.core.scripts.model_storage module mml.core.scripts.notifier module mml.core.scripts.pipeline_configuration module mml.core.scripts.schedulers.base_scheduler module mml.core.scripts.schedulers.clean_scheduler module

mml.core.scripts.schedulers.create_scheduler module mml.core.scripts.schedulers.info_scheduler module mml.core.scripts.schedulers.preprocess_scheduler module mml.core.scripts.schedulers.train_scheduler module mml.core.scripts.schedulers.transfer_scheduler module mml.core.scripts.schedulers.upgrade_scheduler module mml.core.scripts.utils module mml.core.visualization.cm module mml.core.visualization.logo module mml.core.visualization.predictions module mml.core.visualization.utils module mml.interactive module mml.testing.fixtures module mml_config() (in module mml.testing.fixtures) MMLFileManager (class in mml.core.data_loading.file_manager) MMLJobDescription (class in mml.interactive) MMLMisconfigurationException MMLModelCheckpoint (class in mml.core.scripts.callbacks) MMLRichProgressBar (class in mml.core.scripts.callbacks) MMLTQDMProgressBar (class in mml.core.scripts.callbacks) modalities (TaskDescription attribute) Modality (class in mml.core.data_loading.task_attributes) ModalityLoader (class in mml.core.data_loading.modality_loaders) mode (MMLJobDescription attribute) models (RemoveConfig attribute) (ReuseConfig attribute) ModelStorage (class in mml.core.scripts.model_storage) MODIFY (TaskCreatorActions attribute) module mml.cli mml.core.data_loading.augmentations.albumentations mml.core.data_loading.augmentations.augmentation_module mml.core.data_loading.augmentations.kornia mml.core.data_loading.augmentations.mixup_cutmix mml.core.data_loading.augmentations.torchvision mml.core.data_loading.file_manager mml.core.data_loading.lightning_datamodule mml.core.data_loading.modality_loaders mml.core.data_loading.task_attributes mml.core.data_loading.task_dataset mml.core.data_loading.task_description mml.core.data_loading.task_struct mml.core.data_loading.utils mml.core.data_preparation.archive_extractors mml.core.data_preparation.data_archive mml.core.data_preparation.dset_creator mml.core.data_preparation.fake_task mml.core.data_preparation.registry mml.core.data_preparation.task_creator mml.core.data_preparation.utils mml.core.models.lightning_single_frame mml.core.models.smp mml.core.models.timm mml.core.models.torch_base mml.core.scripts.callbacks mml.core.scripts.decorators mml.core.scripts.exceptions mml.core.scripts.model_storage mml.core.scripts.notifier mml.core.scripts.pipeline_configuration mml.core.scripts.schedulers.base_scheduler mml.core.scripts.schedulers.clean_scheduler mml.core.scripts.schedulers.create_scheduler mml.core.scripts.schedulers.info_scheduler mml.core.scripts.schedulers.preprocess_scheduler mml.core.scripts.schedulers.train_scheduler mml.core.scripts.schedulers.transfer_scheduler mml.core.scripts.schedulers.upgrade_scheduler mml.core.scripts.utils mml.core.visualization.cm mml.core.visualization.logo mml.core.visualization.predictions mml.core.visualization.utils mml.interactive mml.testing.fixtures MRI_SCAN (Keyword attribute) MULTI_TASK_SAMPLE_DICTS (DataFormat attribute) multi_threaded_p_tqdm (class in mml.core.scripts.utils) MULTILABEL_CLASSIFICATION (TaskType attribute) MultiLabelClassLoader (class in mml.core.data_loading.modality_loaders) multirun (MMLJobDescription attribute) MultiTaskDataModule (class in mml.core.data_loading.lightning_datamodule)

N

name (TaskDescription attribute) NATURAL_OBJECTS (Keyword attribute) NEPHRECTOMY (Keyword attribute) nested_validation() (TaskCreator method) no_plugins() (in module mml.testing.fixtures) NO_TASK (TaskType attribute) non_permanent_task_attributes() (TaskStruct static method) NONE (TaskCreatorActions attribute) NonMappingOpenCVMaskLoader (class in mml.core.data_loading.modality_loaders)

notify_on_end() (BaseNotifier method) notify_on_failure() (BaseNotifier method) notify_on_start() (BaseNotifier method) num_classes (AllTasksInfos attribute) (TaskStruct property) num_samples (AllTasksInfos attribute) (TaskDescription property) (TaskStruct property) NumpyArrayImageLoader (class in mml.core.data_loading.modality_loaders)

O

on_after_batch_transfer() (MultiTaskDataModule method) on_exception() (StopAfterKeyboardInterrupt method) on_test_end() (MetricsTrackerCallback method) on_test_epoch_end() (SingleFrameLightningModule method) on_train_batch_start() (CutMixCallback method) (MixUpCallback method) on_train_epoch_end() (MetricsTrackerCallback method) (MMLModelCheckpoint method) (SingleFrameLightningModule method)

on_validation_end() (MMLModelCheckpoint method) on_validation_epoch_end() (MetricsTrackerCallback method) (SingleFrameLightningModule method) one_hot_mask() (in module mml.core.data_loading.utils) OpenCVImageLoader (class in mml.core.data_loading.modality_loaders) OpenCVMaskLoader (class in mml.core.data_loading.modality_loaders)

P

parameters (ModelStorage attribute) (RemoveConfig attribute) (ReuseConfig attribute) password (DataArchive attribute) path (DataArchive attribute) performance (EnsembleStorage attribute) (ModelStorage attribute) PillowImageLoader (class in mml.core.data_loading.modality_loaders) pipeline (ModelStorage attribute) (RemoveConfig attribute) PipelineCfg (class in mml.core.scripts.pipeline_configuration) plot_samples() (InfoScheduler method) predict_dataloader() (MultiTaskDataModule method) predict_fold() (TrainingScheduler method) predict_step() (SingleFrameLightningModule method) predictions (EnsembleStorage attribute) (ModelStorage attribute) (RemoveConfig attribute)

prefix_req (MMLJobDescription attribute) prepare_data() (MultiTaskDataModule method) prepare_dataset() (CreateScheduler method) prepare_exp() (AbstractBaseScheduler method) (CleanScheduler method) (CreateScheduler method) (InfoScheduler method) (UpgradeScheduler method) preprocess_and_store() (in module mml.core.scripts.schedulers.preprocess_scheduler) preprocess_task() (PreprocessScheduler method) PreprocessScheduler (class in mml.core.scripts.schedulers.preprocess_scheduler) protocol() (TaskCreator method) PureTorchvisionImageLoader (class in mml.core.data_loading.modality_loaders) push_and_sort() (SingleFrameLightningModule method) push_and_test() (TaskCreator method)

R

r (RGBInfo attribute) rand_bbox() (CutMixCallback method) rand_bbox_minmax() (CutMixCallback method) rar_extractor() (in module mml.core.data_preparation.archive_extractors) reference (TaskDescription attribute) reformat_batch_from_sequential() (SingleFrameLightningModule method) register_dsetcreator() (in module mml.core.data_preparation.registry) register_taskcreator() (in module mml.core.data_preparation.registry) REGRESSION (TaskType attribute) release (TaskDescription attribute) reload_task_index() (MMLFileManager method) remove_downloads() (CleanScheduler method) remove_intermediates() (MMLFileManager method) remove_temp_files() (CleanScheduler method) RemoveConfig (class in mml.core.data_loading.file_manager) render() (MMLJobDescription method)

render_classification_predictions() (in module mml.core.visualization.predictions) render_confusion_matrix() (in module mml.core.visualization.cm) render_labeled_grid() (in module mml.core.visualization.predictions) render_predictions() (in module mml.core.visualization.predictions) render_segmentation_predictions() (in module mml.core.visualization.predictions) requires() (TaskType method) reset_messages() (WIPBar method) reset_sizes() (TaskStructFactory method) results_root (MMLFileManager property) ReuseConfig (class in mml.core.data_loading.file_manager) RGBInfo (class in mml.core.data_loading.task_attributes) run() (AbstractBaseScheduler method) (EmbeddedJobRunner method) (JobRunner method) (MMLJobDescription method) (SubprocessJobRunner method)

S

sample_grid (RemoveConfig attribute) SAMPLE_ID (Modality attribute) save_checkpoint() (BaseModel method) SCENES (Keyword attribute) ScikitImageLoader (class in mml.core.data_loading.modality_loaders) search_overrides() (BaseNotifier static method) search_params (EnsembleStorage attribute) search_run_path() (BaseNotifier static method) select_samples() (TaskDataset method) SEMANTIC_SEGMENTATION (TaskType attribute) set_active_naming() (AbstractBaseScheduler method) SET_FOLDING (TaskCreatorActions attribute) set_peft() (BaseModel method) SET_STATS (TaskCreatorActions attribute) set_stats() (TaskCreator method) set_task_struct_defaults() (TaskStructFactory method) setup() (ClassLoader method) (CombinedModalityLoader method) (MixingCallback method) (ModalityLoader method) (MultiLabelClassLoader method) (MultiTaskDataModule method) (NonMappingOpenCVMaskLoader method) (NumpyArrayImageLoader method) (OpenCVImageLoader method) (OpenCVMaskLoader method) (PillowImageLoader method) (PureTorchvisionImageLoader method) (ScikitImageLoader method) (SoftLabelClassLoader method) (ValueLoader method)

setup_redirection() (SingleFrameLightningModule method) show_logo() (in module mml.core.visualization.logo) SINGLE_SAMPLE_DICT (DataFormat attribute) SingleFrameLightningModule (class in mml.core.models.lightning_single_frame) Singleton (class in mml.core.scripts.utils) Sizes (class in mml.core.data_loading.task_attributes) sizes (TaskDescription attribute) SlackNotifier (class in mml.core.scripts.notifier) small_tasks (AllTasksInfos attribute) smooth_one_hot() (MixingCallback method) SMPGenericModel (class in mml.core.models.smp) SMPHead (class in mml.core.models.smp) SOFT_CLASSES (Modality attribute) SoftLabelClassLoader (class in mml.core.data_loading.modality_loaders) split_folds() (TaskCreator method) state_dict() (MetricsTrackerCallback method) STATS_SET (TaskCreatorState attribute) stds (TaskDescription attribute) StopAfterKeyboardInterrupt (class in mml.core.scripts.callbacks) store() (EnsembleStorage method) (ModelStorage method) (PipelineCfg method) store_csv() (AllTasksInfos method) SubprocessJobRunner (class in mml.interactive) supports() (BaseModel method) (SMPGenericModel method) (TimmGenericModel method)

T

tar_extractor() (in module mml.core.data_preparation.archive_extractors) target (TaskStruct property) TASK (Modality attribute) task (ModelStorage attribute) task_type (TaskDescription attribute) task_types (AllTasksInfos attribute) TaskCreator (class in mml.core.data_preparation.task_creator) TaskCreatorActions (class in mml.core.data_preparation.utils) TaskCreatorState (class in mml.core.data_preparation.utils) TaskDataset (class in mml.core.data_loading.task_dataset) TaskDescription (class in mml.core.data_loading.task_description) TaskNotFoundError tasks (EnsembleStorage property) TaskStruct (class in mml.core.data_loading.task_struct) TaskStructFactory (class in mml.core.data_loading.task_struct) TaskType (class in mml.core.data_loading.task_attributes) teardown() (MultiTaskDataModule method) TEST (DataSplit attribute) (LearningPhase attribute) test_dataloader() (MultiTaskDataModule method) test_samples (TaskDescription attribute) test_step() (SingleFrameLightningModule method) test_task() (TrainingScheduler method) test_task_monkeypatch() (in module mml.testing.fixtures) TESTING_DATA (DataKind attribute) TESTING_LABELS (DataKind attribute)

THREE_D_IMAGE (Modality attribute) throttle_logging (class in mml.core.scripts.utils) timeout() (in module mml.core.scripts.decorators) TimmGenericModel (class in mml.core.models.timm) TimmHead (class in mml.core.models.timm) TISSUE_PATHOLOGY (Keyword attribute) to_json() (TaskDescription method) to_list() (RGBInfo method) (Sizes method) TorchvisionAugmentationModule (class in mml.core.data_loading.augmentations.torchvision) TRAIN (DataSplit attribute) (LearningPhase attribute) train_dataloader() (MultiTaskDataModule method) train_fold() (TrainingScheduler method) train_folds (TaskDescription attribute) train_samples (TaskDescription attribute) TRAINING_DATA (DataKind attribute) TRAINING_LABELS (DataKind attribute) training_step() (SingleFrameLightningModule method) training_time (ModelStorage attribute) TrainingScheduler (class in mml.core.scripts.schedulers.train_scheduler) TransferScheduler (class in mml.core.scripts.schedulers.transfer_scheduler) transform() (AcceleratedPillowImageLoader static method) (PillowImageLoader static method) transform_masks() (DSetCreator method) traverse() (TaskCreatorState method) TupelizedTaskDataset (class in mml.core.data_loading.task_dataset)

U

ULTRASOUND (Keyword attribute) undo_image_normalization() (in module mml.core.visualization.utils) undo_prefix() (MMLFileManager static method) undup_names() (in module mml.core.data_loading.task_struct) unfreeze_backbone() (BaseModel method) UNKNOWN (License attribute) (TaskType attribute) UNLABELED_DATA (DataKind attribute)

unlabeled_samples (TaskDescription attribute) UNLABELLED (DataSplit attribute) unpack_and_store() (DSetCreator method) unpack_files() (in module mml.core.data_preparation.archive_extractors) upgrade_0_12() (UpgradeScheduler method) UpgradeScheduler (class in mml.core.scripts.schedulers.upgrade_scheduler) url (TaskDescription attribute) use_existing_folds() (TaskCreator method)

V

VAL (DataSplit attribute) (LearningPhase attribute) val_dataloader() (MultiTaskDataModule method) validation_step() (SingleFrameLightningModule method) VALUE (Modality attribute) ValueLoader (class in mml.core.data_loading.modality_loaders) verify_class_modality() (in module mml.core.data_preparation.task_creator) verify_classes_modality() (in module mml.core.data_preparation.task_creator)

verify_mask_modality() (in module mml.core.data_preparation.task_creator) verify_modality_entry() (TaskCreator method) verify_pre_download() (DSetCreator method) verify_softclasses_modality() (in module mml.core.data_preparation.task_creator) verify_value_modality() (in module mml.core.data_preparation.task_creator) versionadded() (in module mml.core.scripts.decorators) versionchanged() (in module mml.core.scripts.decorators) VIDEO_CLASS (TaskType attribute) VIDEO_CLIP (Modality attribute)

W

weights (EnsembleStorage attribute) WIPBar (class in mml.core.data_preparation.utils)

write_out_commands() (in module mml.interactive) write_task_description() (MMLFileManager static method)

X

X_RAY (Keyword attribute)

Z

zip_extractor() (in module mml.core.data_preparation.archive_extractors)